| 1 |
CIRI2 |
An improved multithreading detection tool, CIRI2, that used an adapted maximum likelihood estimation based on multiple seed matching to identify back-spliced junction reads and to filter false positives derived from repetitive sequences and mapping errors |
v2.0.6 |
28334140 |
| 2 |
CIRCexplorer2 |
The successor of CIRCexplorer with plenty of new features to facilitate circular RNA identification and characterization. |
v2.3.8 |
27365365 |
| 3 |
DCC |
DCC is a python package intended to detect and quantify circRNAs with high specificity. |
v0.4.8 |
26556385 |
| 4 |
CIRI-full |
An accurate, high-throughput approach that uses both BSJ and reverse overlap (RO) features to reconstruct and quantify full-length circular RNAs from RNA-seq data sets. |
v2.0 |
30660194 |
| 5 |
RPFdb |
A public resource for hosting, analyzing and visualizing ribosome profiling (Ribo-seq) data. |
v2.0 |
30335166 |
| 6 |
REPIC |
A database dedicated to provide a new resource to investigate potential functiAons and mechanisms of N6-adenosine methylation (m6A) modifications. |
v1.0 |
32345346 |
| 7 |
IRESbase |
A database curated all experimentally validated IRESs in the published literature. |
v1.0 |
12457563 |
| 8 |
circBase |
A database for circular RNAs,hosting data from various Homo sapiens, Mus musculus, Caenorhabditis elegans, and Latimeria samples. |
v Jul. 2017 |
25234927 |
| 9 |
CIRCpedia |
An updated comprehensive database containing circRNA annotations from over 180 RNA-seq datasets across six different species. |
v2.0 |
30172046 |
| 10 |
circAtlas |
An integrated resource of circRNAs in vertebrates, integrating over one millions of circRNAs across 6 species (human, macaca, mouse, rat, pig, chicken) and a variety of tissues. |
v2.0 |
32345360 |
| 11 |
circBank |
A database of more than 14,000 human-annotated circRNAs, showing five features of the circRNA, including the miRNA binding site, conservation of circRNAs, m6A modification of circRNAs, mutation of circRNAs and protein-coding potential of circRNAs. |
v1.0 |
31023147 |
| 12 |
circRNADb |
A database containing 32,914 human exonic circRNAs carefully selected from diversified sources. |
v1.0 |
27725737 |
| 13 |
CSCD |
A database developed for cancer-specific circRNAs and their relationship with microRNAs and RNA-binding proteins. |
v1.0 |
29036403 |
| 14 |
exoRBase |
A repository of circular RNA (circRNA), long non-coding RNA (lncRNA) and messenger RNA (mRNA) derived from RNA-seq data analyses of human blood exosomes. |
v1.0 |
30053265 |
| 15 |
TSCD |
This database is constructed to provide a global view of tissue-specific circRNA in main tissues of human and mouse and is able to contribute to identify new markers for organogenesis and development disease. |
v1.0 |
27543790 |
| 16 |
Circ2Disease |
A database that manually curated experiment-supported human circRNAs, aims at providing a comprehesive associations between of circRNA and human diseases. |
v1.0 |
30030469 |